Index

C

cascade_plot() (in module recon.plot.cascade_plot) Celltype (class in recon.explore.recon) combine_effects() (in module recon.explore.recon) compute_atac_to_rna_links() (in module recon.infer_grn.layers)

compute_rna_network() (in module recon.infer_grn.layers) compute_tf_network() (in module recon.infer_grn.layers) compute_tf_to_atac_links() (in module recon.infer_grn.layers) contrast_cascade_plot() (in module recon.plot.cascade_plot)

D

download_tutorial() (in module recon.data.load_data)

E

explore() (recon.explore.recon.Celltype method) (recon.explore.recon.Multicell method)

F

fetch_all_tutorial_data() (in module recon.data.load_data)

fetch_tutorial_data() (in module recon.data.load_data) format_multicell_results() (in module recon.explore.recon)

G

generate_grn() (in module recon.infer_grn.layers)

I

illustrate_multicell() (in module recon.plot.plot_multicell) (recon.explore.recon.Multicell method)

L

load_receptor_genes() (in module recon.data.load_data)

M

module recon.data.load_data recon.explore.recon recon.infer_grn.layers

Multicell (class in recon.explore.recon) multicell_targets() (in module recon.explore.recon) Multixrank() (recon.explore.recon.Celltype method)

P

plot_celltype_comparison() (in module recon.plot.plot_results) plot_intercell_sankey() (in module recon.plot.sankey_paths)

plot_intracell_sankey() (in module recon.plot.sankey_paths) plot_ligand_sankey() (in module recon.plot.sankey_paths)

R

recon.data.load_data module recon.explore.recon module

recon.infer_grn.layers module rename_celltype() (recon.explore.recon.Celltype method)

S

set_lambda() (in module recon.explore.recon)

summarize_indirect_effects() (in module recon.explore.recon)